J4_8FOM_001

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

8FOM|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FOM_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0677

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FOM|1|QA|G|115
8FOM|1|QA|A|116
8FOM|1|QA|G|117
8FOM|1|QA|U|118
8FOM|1|QA|A|119
8FOM|1|QA|A|120
8FOM|1|QA|C|121
8FOM|1|QA|G|122
*
8FOM|1|QA|U|239
8FOM|1|QA|C|240
*
8FOM|1|QA|G|286
8FOM|1|QA|U|287
8FOM|1|QA|A|288
8FOM|1|QA|G|289
*
8FOM|1|QA|C|311
8FOM|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17