J4_8FOM_005

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8FOM|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FOM_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0987

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8FOM|1|RA|C|268
8FOM|1|RA|U|269
*
8FOM|1|RA|G|370
8FOM|1|RA|A|371
8FOM|1|RA|G|372
8FOM|1|RA|U|373
8FOM|1|RA|A|374
8FOM|1|RA|C|375
*
8FOM|1|RA|G|399
8FOM|1|RA|G|400
8FOM|1|RA|A|401
8FOM|1|RA|A|402
8FOM|1|RA|U|403
8FOM|1|RA|C|404
8FOM|1|RA|U|405
8FOM|1|RA|G|406
*
8FOM|1|RA|U|421
8FOM|1|RA|A|422
8FOM|1|RA|A|423
8FOM|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9