J4_8FON_001

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

8FON|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FON_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0708

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FON|1|QA|G|115
8FON|1|QA|A|116
8FON|1|QA|G|117
8FON|1|QA|U|118
8FON|1|QA|A|119
8FON|1|QA|A|120
8FON|1|QA|C|121
8FON|1|QA|G|122
*
8FON|1|QA|U|239
8FON|1|QA|C|240
*
8FON|1|QA|G|286
8FON|1|QA|U|287
8FON|1|QA|A|288
8FON|1|QA|G|289
*
8FON|1|QA|C|311
8FON|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17