J4_8FON_029
3D structure
- PDB id
- 8FON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- UUAG*CA*UGGUCG*CA
- Length
- 14 nucleotides
- Bulged bases
- 8FON|1|QV|U|8, 8FON|1|QV|U|47, 8FON|1|QV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FON_029 not in the Motif Atlas
- Homologous match to J4_4QEI_001
- Geometric discrepancy: 0.3875
- The information below is about J4_4QEI_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_72305.5
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8FON|1|QV|U|7
8FON|1|QV|U|8
8FON|1|QV|A|9
8FON|1|QV|G|10
*
8FON|1|QV|C|25
8FON|1|QV|A|26
*
8FON|1|QV|U|44
8FON|1|QV|G|45
8FON|1|QV|G|46
8FON|1|QV|U|47
8FON|1|QV|C|48
8FON|1|QV|G|49
*
8FON|1|QV|C|65
8FON|1|QV|A|66
Current chains
- Chain QV
- P-site tRNA^Lys(SUU)
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QM
- 30S ribosomal protein S13
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
- Chain RQ
- 50S ribosomal protein L16
- Chain RZ
- 50S ribosomal protein L25
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