J4_8FR8_010
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- AACC*GAC*GGACA*UCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FR8_010 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.1203
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8FR8|1|A|A|2867
8FR8|1|A|A|2868
8FR8|1|A|C|2869
8FR8|1|A|C|2870
*
8FR8|1|A|G|2898
8FR8|1|A|A|2899
8FR8|1|A|C|2900
*
8FR8|1|A|G|2955
8FR8|1|A|G|2956
8FR8|1|A|A|2957
8FR8|1|A|C|2958
8FR8|1|A|A|2959
*
8FR8|1|A|U|2993
8FR8|1|A|C|2994
8FR8|1|A|U|2995
Current chains
- Chain A
- 23S rRNA (3119-MER)
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain T
- 50S ribosomal protein L13
- Chain U
- 50S ribosomal protein L14
Coloring options: