J4_8FRU_001

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CC*GAGUAG*CGAAG*CAAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FRU|1|1|C|108
8FRU|1|1|C|109
*
8FRU|1|1|G|219
8FRU|1|1|A|220
8FRU|1|1|G|221
8FRU|1|1|U|222
8FRU|1|1|A|223
8FRU|1|1|G|224
*
8FRU|1|1|C|245
8FRU|1|1|G|246
8FRU|1|1|A|247
8FRU|1|1|A|248
8FRU|1|1|G|249
*
8FRU|1|1|C|266
8FRU|1|1|A|267
8FRU|1|1|A|268
8FRU|1|1|G|269

Current chains

Chain 1

28S rRNA

Nearby chains

Chain L

60S ribosomal protein eL13

Chain N

60S ribosomal protein eL15

Chain h

60S ribosomal protein uL29

Chain i

60S ribosomal protein eL36