J4_8FRU_002

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGCGAGG*CGCC*GAG*CGUACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FRU|1|1|C|149
8FRU|1|1|G|150
8FRU|1|1|C|151
8FRU|1|1|G|152
8FRU|1|1|A|153
8FRU|1|1|G|154
8FRU|1|1|G|155
*
8FRU|1|1|C|170
8FRU|1|1|G|171
8FRU|1|1|C|172
8FRU|1|1|C|173
*
8FRU|1|1|G|177
8FRU|1|1|A|178
8FRU|1|1|G|179
*
8FRU|1|1|C|191
8FRU|1|1|G|192
8FRU|1|1|U|193
8FRU|1|1|A|194
8FRU|1|1|C|195
8FRU|1|1|G|196

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 4

5.8S rRNA

Chain C

60S ribosomal protein uL4

Chain Y

60S ribosomal protein uL24