J4_8FRU_003

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCGCUAC*GGAC*GCGCGG*CG

Length

19 nucleotides

Bulged bases

8FRU|1|1|C|1138, 8FRU|1|1|U|1141, 8FRU|1|1|C|1508, 8FRU|1|1|G|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FRU|1|1|C|1137
8FRU|1|1|C|1138
8FRU|1|1|G|1139
8FRU|1|1|C|1140
8FRU|1|1|U|1141
8FRU|1|1|A|1142
8FRU|1|1|C|1143
*
8FRU|1|1|G|1157
8FRU|1|1|G|1158
8FRU|1|1|A|1159
8FRU|1|1|C|1160
*
8FRU|1|1|G|1505
8FRU|1|1|C|1506
8FRU|1|1|G|1507
8FRU|1|1|C|1508
8FRU|1|1|G|1509
8FRU|1|1|G|1510
*
8FRU|1|1|C|1838
8FRU|1|1|G|1839

Current chains

Chain 1

28S rRNA

Nearby chains

Chain P

60S ribosomal protein uL22

Chain R

60S ribosomal protein eL19

Chain d

60S ribosomal protein eL31