J4_8FRU_007
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8FRU|1|1|U|1800
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FRU_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1003
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FRU|1|1|C|1678
8FRU|1|1|U|1679
8FRU|1|1|G|1680
*
8FRU|1|1|C|1734
8FRU|1|1|G|1735
*
8FRU|1|1|C|1753
8FRU|1|1|U|1754
8FRU|1|1|U|1755
8FRU|1|1|A|1756
8FRU|1|1|A|1757
8FRU|1|1|G|1758
8FRU|1|1|G|1759
8FRU|1|1|U|1760
8FRU|1|1|A|1761
8FRU|1|1|G|1762
*
8FRU|1|1|U|1796
8FRU|1|1|G|1797
8FRU|1|1|A|1798
8FRU|1|1|A|1799
8FRU|1|1|U|1800
8FRU|1|1|G|1801
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein uL2
- Chain n
- 60S ribosomal protein eL41
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