J4_8FRU_008

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCACG*CCG*CC*GGG

Length

13 nucleotides

Bulged bases

8FRU|1|1|C|2079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FRU|1|1|C|2076
8FRU|1|1|C|2077
8FRU|1|1|A|2078
8FRU|1|1|C|2079
8FRU|1|1|G|2080
*
8FRU|1|1|C|2134
8FRU|1|1|C|2135
8FRU|1|1|G|2136
*
8FRU|1|1|C|2163
8FRU|1|1|C|2164
*
8FRU|1|1|G|2173
8FRU|1|1|G|2174
8FRU|1|1|G|2175

Current chains

Chain 1

28S rRNA

Nearby chains

Chain D

60S ribosomal protein uL18

Chain T

60S ribosomal protein eL21

Chain o

60S ribosomal protein eL42