J4_8FTO_001

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8FTO|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FTO_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1421

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FTO|1|A|G|115
8FTO|1|A|A|116
8FTO|1|A|G|117
8FTO|1|A|U|118
8FTO|1|A|A|119
8FTO|1|A|A|120
8FTO|1|A|U|121
8FTO|1|A|G|122
*
8FTO|1|A|U|239
8FTO|1|A|G|240
*
8FTO|1|A|C|286
8FTO|1|A|U|287
8FTO|1|A|A|288
8FTO|1|A|G|289
*
8FTO|1|A|C|311
8FTO|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17