J4_8FTO_002

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8FTO|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FTO_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1629

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FTO|1|A|G|142
8FTO|1|A|A|143
8FTO|1|A|G|144
*
8FTO|1|A|C|178
8FTO|1|A|A|179
8FTO|1|A|U|180
8FTO|1|A|A|181
8FTO|1|A|A|182
8FTO|1|A|C|183
8FTO|1|A|G|184
*
8FTO|1|A|C|193
8FTO|1|A|C|194
8FTO|1|A|A|195
8FTO|1|A|A|196
8FTO|1|A|A|197
8FTO|1|A|G|198
*
8FTO|1|A|U|219
8FTO|1|A|G|220
8FTO|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20