3D structure

PDB id
8FTO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with an improved MS2 tag inserted in H98
Experimental method
ELECTRON MICROSCOPY
Resolution
1.85 Å

Loop

Sequence
GGGC*GAC*GGAAG*UGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8FTO_015 not in the Motif Atlas
Homologous match to J4_5J7L_028
Geometric discrepancy: 0.0471
The information below is about J4_5J7L_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

8FTO|1|a|G|2643
8FTO|1|a|G|2644
8FTO|1|a|G|2645
8FTO|1|a|C|2646
*
8FTO|1|a|G|2674
8FTO|1|a|A|2675
8FTO|1|a|C|2676
*
8FTO|1|a|G|2731
8FTO|1|a|G|2732
8FTO|1|a|A|2733
8FTO|1|a|A|2734
8FTO|1|a|G|2735
*
8FTO|1|a|U|2769
8FTO|1|a|G|2770
8FTO|1|a|C|2771

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain i
50S ribosomal protein L13
Chain j
50S ribosomal protein L14

Coloring options:


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