J4_8FZD_001

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8FZD|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZD_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1197

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8FZD|1|A|C|268
8FZD|1|A|C|269
*
8FZD|1|A|G|370
8FZD|1|A|A|371
8FZD|1|A|G|372
8FZD|1|A|U|373
8FZD|1|A|A|374
8FZD|1|A|G|375
*
8FZD|1|A|U|399
8FZD|1|A|G|400
8FZD|1|A|A|401
8FZD|1|A|A|402
8FZD|1|A|U|403
8FZD|1|A|A|404
8FZD|1|A|U|405
8FZD|1|A|G|406
*
8FZD|1|A|C|421
8FZD|1|A|A|422
8FZD|1|A|A|423
8FZD|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28