J4_8FZD_013

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8FZD|1|a|C|183, 8FZD|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZD_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1953

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FZD|1|a|G|142
8FZD|1|a|A|143
8FZD|1|a|G|144
*
8FZD|1|a|C|178
8FZD|1|a|A|179
8FZD|1|a|U|180
8FZD|1|a|A|181
8FZD|1|a|A|182
8FZD|1|a|C|183
8FZD|1|a|G|184
*
8FZD|1|a|C|193
8FZD|1|a|C|194
8FZD|1|a|A|195
8FZD|1|a|A|196
8FZD|1|a|A|197
8FZD|1|a|G|198
*
8FZD|1|a|U|219
8FZD|1|a|G|220
8FZD|1|a|C|221

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20