J4_8FZE_001

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8FZE|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZE_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1071

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8FZE|1|A|C|268
8FZE|1|A|C|269
*
8FZE|1|A|G|370
8FZE|1|A|A|371
8FZE|1|A|G|372
8FZE|1|A|U|373
8FZE|1|A|A|374
8FZE|1|A|G|375
*
8FZE|1|A|U|399
8FZE|1|A|G|400
8FZE|1|A|A|401
8FZE|1|A|A|402
8FZE|1|A|U|403
8FZE|1|A|A|404
8FZE|1|A|U|405
8FZE|1|A|G|406
*
8FZE|1|A|C|421
8FZE|1|A|A|422
8FZE|1|A|A|423
8FZE|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28