J4_8FZE_012

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8FZE|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZE_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.258

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FZE|1|a|G|115
8FZE|1|a|A|116
8FZE|1|a|G|117
8FZE|1|a|U|118
8FZE|1|a|A|119
8FZE|1|a|A|120
8FZE|1|a|U|121
8FZE|1|a|G|122
*
8FZE|1|a|U|239
8FZE|1|a|G|240
*
8FZE|1|a|C|286
8FZE|1|a|U|287
8FZE|1|a|A|288
8FZE|1|a|G|289
*
8FZE|1|a|C|311
8FZE|1|a|C|312

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17