J4_8FZE_013

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8FZE|1|a|C|183, 8FZE|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZE_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2015

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FZE|1|a|G|142
8FZE|1|a|A|143
8FZE|1|a|G|144
*
8FZE|1|a|C|178
8FZE|1|a|A|179
8FZE|1|a|U|180
8FZE|1|a|A|181
8FZE|1|a|A|182
8FZE|1|a|C|183
8FZE|1|a|G|184
*
8FZE|1|a|C|193
8FZE|1|a|C|194
8FZE|1|a|A|195
8FZE|1|a|A|196
8FZE|1|a|A|197
8FZE|1|a|G|198
*
8FZE|1|a|U|219
8FZE|1|a|G|220
8FZE|1|a|C|221

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20