J4_8FZF_001

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8FZF|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZF_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.124

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8FZF|1|A|C|268
8FZF|1|A|C|269
*
8FZF|1|A|G|370
8FZF|1|A|A|371
8FZF|1|A|G|372
8FZF|1|A|U|373
8FZF|1|A|A|374
8FZF|1|A|G|375
*
8FZF|1|A|U|399
8FZF|1|A|G|400
8FZF|1|A|A|401
8FZF|1|A|A|402
8FZF|1|A|U|403
8FZF|1|A|A|404
8FZF|1|A|U|405
8FZF|1|A|G|406
*
8FZF|1|A|C|421
8FZF|1|A|A|422
8FZF|1|A|A|423
8FZF|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28