3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
8FZF|1|A|G|1271, 8FZF|1|A|A|1272, 8FZF|1|A|U|1273, 8FZF|1|A|A|1275, 8FZF|1|A|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8FZF_004 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.1097
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

8FZF|1|A|C|1270
8FZF|1|A|G|1271
8FZF|1|A|A|1272
8FZF|1|A|U|1273
8FZF|1|A|A|1274
8FZF|1|A|A|1275
8FZF|1|A|A|1276
*
8FZF|1|A|U|1294
8FZF|1|A|C|1295
*
8FZF|1|A|G|1645
8FZF|1|A|C|1646
8FZF|1|A|U|1647
8FZF|1|A|U|1648
*
8FZF|1|A|A|2009
8FZF|1|A|G|2010

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L32
Chain P
Large ribosomal subunit protein bL17
Chain U
50S ribosomal protein L22

Coloring options:


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