J4_8FZF_004
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8FZF|1|A|G|1271, 8FZF|1|A|A|1272, 8FZF|1|A|U|1273, 8FZF|1|A|A|1275, 8FZF|1|A|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FZF_004 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.1097
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8FZF|1|A|C|1270
8FZF|1|A|G|1271
8FZF|1|A|A|1272
8FZF|1|A|U|1273
8FZF|1|A|A|1274
8FZF|1|A|A|1275
8FZF|1|A|A|1276
*
8FZF|1|A|U|1294
8FZF|1|A|C|1295
*
8FZF|1|A|G|1645
8FZF|1|A|C|1646
8FZF|1|A|U|1647
8FZF|1|A|U|1648
*
8FZF|1|A|A|2009
8FZF|1|A|G|2010
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain P
- Large ribosomal subunit protein bL17
- Chain U
- 50S ribosomal protein L22
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