J4_8FZF_007

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*UU*AC*GC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZF_007 not in the Motif Atlas

Homologous match to J4_5J7L_024

Geometric discrepancy: 0.1163

The information below is about J4_5J7L_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8FZF|1|A|G|1444
8FZF|1|A|G|1445
*
8FZF|1|A|U|1466
8FZF|1|A|U|1467
*
8FZF|1|A|A|1525
8FZF|1|A|C|1526
*
8FZF|1|A|G|1546
8FZF|1|A|C|1547

Current chains

Chain A

23S Ribosomal RNA

Nearby chains