J4_8FZF_011

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZF_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1033

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8FZF|1|A|G|2643
8FZF|1|A|G|2644
8FZF|1|A|G|2645
8FZF|1|A|C|2646
*
8FZF|1|A|G|2674
8FZF|1|A|A|2675
8FZF|1|A|C|2676
*
8FZF|1|A|G|2731
8FZF|1|A|G|2732
8FZF|1|A|A|2733
8FZF|1|A|A|2734
8FZF|1|A|G|2735
*
8FZF|1|A|U|2769
8FZF|1|A|G|2770
8FZF|1|A|C|2771

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L13

Chain M

50S ribosomal protein L14