3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
8FZF|1|a|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8FZF_012 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2583
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8FZF|1|a|G|115
8FZF|1|a|A|116
8FZF|1|a|G|117
8FZF|1|a|U|118
8FZF|1|a|A|119
8FZF|1|a|A|120
8FZF|1|a|U|121
8FZF|1|a|G|122
*
8FZF|1|a|U|239
8FZF|1|a|G|240
*
8FZF|1|a|C|286
8FZF|1|a|U|287
8FZF|1|a|A|288
8FZF|1|a|G|289
*
8FZF|1|a|C|311
8FZF|1|a|C|312

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain p
30S ribosomal protein S16
Chain q
Small ribosomal subunit protein uS17

Coloring options:


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