J4_8FZG_006

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8FZG|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZG_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0946

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8FZG|1|A|U|1313
8FZG|1|A|C|1314
*
8FZG|1|A|G|1338
8FZG|1|A|G|1339
8FZG|1|A|U|1340
8FZG|1|A|G|1341
8FZG|1|A|A|1342
8FZG|1|A|G|1343
*
8FZG|1|A|C|1404
8FZG|1|A|U|1405
*
8FZG|1|A|A|1597
8FZG|1|A|A|1598
8FZG|1|A|U|1599
8FZG|1|A|C|1600
8FZG|1|A|G|1601
8FZG|1|A|U|1602
8FZG|1|A|A|1603

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L23