J4_8FZG_012

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8FZG|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZG_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2403

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FZG|1|a|G|115
8FZG|1|a|A|116
8FZG|1|a|G|117
8FZG|1|a|U|118
8FZG|1|a|A|119
8FZG|1|a|A|120
8FZG|1|a|U|121
8FZG|1|a|G|122
*
8FZG|1|a|U|239
8FZG|1|a|G|240
*
8FZG|1|a|C|286
8FZG|1|a|U|287
8FZG|1|a|A|288
8FZG|1|a|G|289
*
8FZG|1|a|C|311
8FZG|1|a|C|312

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17