J4_8FZG_013

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8FZG|1|a|C|183, 8FZG|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZG_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2051

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FZG|1|a|G|142
8FZG|1|a|A|143
8FZG|1|a|G|144
*
8FZG|1|a|C|178
8FZG|1|a|A|179
8FZG|1|a|U|180
8FZG|1|a|A|181
8FZG|1|a|A|182
8FZG|1|a|C|183
8FZG|1|a|G|184
*
8FZG|1|a|C|193
8FZG|1|a|C|194
8FZG|1|a|A|195
8FZG|1|a|A|196
8FZG|1|a|A|197
8FZG|1|a|G|198
*
8FZG|1|a|U|219
8FZG|1|a|G|220
8FZG|1|a|C|221

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20