J4_8FZH_013

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8FZH|1|a|C|183, 8FZH|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZH_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2183

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FZH|1|a|G|142
8FZH|1|a|A|143
8FZH|1|a|G|144
*
8FZH|1|a|C|178
8FZH|1|a|A|179
8FZH|1|a|U|180
8FZH|1|a|A|181
8FZH|1|a|A|182
8FZH|1|a|C|183
8FZH|1|a|G|184
*
8FZH|1|a|C|193
8FZH|1|a|C|194
8FZH|1|a|A|195
8FZH|1|a|A|196
8FZH|1|a|A|197
8FZH|1|a|G|198
*
8FZH|1|a|U|219
8FZH|1|a|G|220
8FZH|1|a|C|221

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20