J4_8FZI_013

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8FZI|1|a|C|183, 8FZI|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZI_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2111

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FZI|1|a|G|142
8FZI|1|a|A|143
8FZI|1|a|G|144
*
8FZI|1|a|C|178
8FZI|1|a|A|179
8FZI|1|a|U|180
8FZI|1|a|A|181
8FZI|1|a|A|182
8FZI|1|a|C|183
8FZI|1|a|G|184
*
8FZI|1|a|C|193
8FZI|1|a|C|194
8FZI|1|a|A|195
8FZI|1|a|A|196
8FZI|1|a|A|197
8FZI|1|a|G|198
*
8FZI|1|a|U|219
8FZI|1|a|G|220
8FZI|1|a|C|221

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20