J4_8FZJ_001

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8FZJ|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZJ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1085

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8FZJ|1|A|C|268
8FZJ|1|A|C|269
*
8FZJ|1|A|G|370
8FZJ|1|A|A|371
8FZJ|1|A|G|372
8FZJ|1|A|U|373
8FZJ|1|A|A|374
8FZJ|1|A|G|375
*
8FZJ|1|A|U|399
8FZJ|1|A|G|400
8FZJ|1|A|A|401
8FZJ|1|A|A|402
8FZJ|1|A|U|403
8FZJ|1|A|A|404
8FZJ|1|A|U|405
8FZJ|1|A|G|406
*
8FZJ|1|A|C|421
8FZJ|1|A|A|422
8FZJ|1|A|A|423
8FZJ|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28