J4_8FZJ_004

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8FZJ|1|A|G|1271, 8FZJ|1|A|A|1272, 8FZJ|1|A|U|1273, 8FZJ|1|A|A|1275, 8FZJ|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZJ_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0856

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8FZJ|1|A|C|1270
8FZJ|1|A|G|1271
8FZJ|1|A|A|1272
8FZJ|1|A|U|1273
8FZJ|1|A|A|1274
8FZJ|1|A|A|1275
8FZJ|1|A|A|1276
*
8FZJ|1|A|U|1294
8FZJ|1|A|C|1295
*
8FZJ|1|A|G|1645
8FZJ|1|A|C|1646
8FZJ|1|A|U|1647
8FZJ|1|A|U|1648
*
8FZJ|1|A|A|2009
8FZJ|1|A|G|2010

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain P

50S ribosomal protein L17

Chain U

50S ribosomal protein L22