J4_8FZJ_012

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8FZJ|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZJ_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2855

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FZJ|1|a|G|115
8FZJ|1|a|A|116
8FZJ|1|a|G|117
8FZJ|1|a|U|118
8FZJ|1|a|A|119
8FZJ|1|a|A|120
8FZJ|1|a|U|121
8FZJ|1|a|G|122
*
8FZJ|1|a|U|239
8FZJ|1|a|G|240
*
8FZJ|1|a|C|286
8FZJ|1|a|U|287
8FZJ|1|a|A|288
8FZJ|1|a|G|289
*
8FZJ|1|a|C|311
8FZJ|1|a|C|312

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17