J4_8FZJ_013

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8FZJ|1|a|C|183, 8FZJ|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZJ_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.188

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FZJ|1|a|G|142
8FZJ|1|a|A|143
8FZJ|1|a|G|144
*
8FZJ|1|a|C|178
8FZJ|1|a|A|179
8FZJ|1|a|U|180
8FZJ|1|a|A|181
8FZJ|1|a|A|182
8FZJ|1|a|C|183
8FZJ|1|a|G|184
*
8FZJ|1|a|C|193
8FZJ|1|a|C|194
8FZJ|1|a|A|195
8FZJ|1|a|A|196
8FZJ|1|a|A|197
8FZJ|1|a|G|198
*
8FZJ|1|a|U|219
8FZJ|1|a|G|220
8FZJ|1|a|C|221

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20