3D structure

PDB id
8G29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
8G29|1|1a|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8G29_011 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.0599
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8G29|1|1a|G|115
8G29|1|1a|A|116
8G29|1|1a|G|117
8G29|1|1a|U|118
8G29|1|1a|A|119
8G29|1|1a|A|120
8G29|1|1a|C|121
8G29|1|1a|G|122
*
8G29|1|1a|U|239
8G29|1|1a|C|240
*
8G29|1|1a|G|286
8G29|1|1a|U|287
8G29|1|1a|A|288
8G29|1|1a|G|289
*
8G29|1|1a|C|311
8G29|1|1a|C|312

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1p
30S ribosomal protein S16
Chain 1q
30S ribosomal protein S17

Coloring options:


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