J4_8G2B_017

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8G2B|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G2B_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0853

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8G2B|1|2A|C|268
8G2B|1|2A|U|269
*
8G2B|1|2A|G|370
8G2B|1|2A|A|371
8G2B|1|2A|G|372
8G2B|1|2A|U|373
8G2B|1|2A|A|374
8G2B|1|2A|C|375
*
8G2B|1|2A|G|399
8G2B|1|2A|G|400
8G2B|1|2A|A|401
8G2B|1|2A|A|402
8G2B|1|2A|U|403
8G2B|1|2A|C|404
8G2B|1|2A|U|405
8G2B|1|2A|G|406
*
8G2B|1|2A|U|421
8G2B|1|2A|A|422
8G2B|1|2A|A|423
8G2B|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9