J4_8G2D_017

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8G2D|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G2D_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0675

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8G2D|1|2A|C|268
8G2D|1|2A|U|269
*
8G2D|1|2A|G|370
8G2D|1|2A|A|371
8G2D|1|2A|G|372
8G2D|1|2A|U|373
8G2D|1|2A|A|374
8G2D|1|2A|C|375
*
8G2D|1|2A|G|399
8G2D|1|2A|G|400
8G2D|1|2A|A|401
8G2D|1|2A|A|402
8G2D|1|2A|U|403
8G2D|1|2A|C|404
8G2D|1|2A|U|405
8G2D|1|2A|G|406
*
8G2D|1|2A|U|421
8G2D|1|2A|A|422
8G2D|1|2A|A|423
8G2D|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9