3D structure

PDB id
8G2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGGC*GAC*GGAAG*CGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8G2D_026 not in the Motif Atlas
Homologous match to J4_9DFE_010
Geometric discrepancy: 0.0717
The information below is about J4_9DFE_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

8G2D|1|2A|G|2643
8G2D|1|2A|G|2644
8G2D|1|2A|G|2645
8G2D|1|2A|C|2646
*
8G2D|1|2A|G|2674
8G2D|1|2A|A|2675
8G2D|1|2A|C|2676
*
8G2D|1|2A|G|2731
8G2D|1|2A|G|2732
8G2D|1|2A|A|2733
8G2D|1|2A|A|2734
8G2D|1|2A|G|2735
*
8G2D|1|2A|C|2769
8G2D|1|2A|G|2770
8G2D|1|2A|C|2771

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2E
50S ribosomal protein L3
Chain 2N
50S ribosomal protein L13
Chain 2O
50S ribosomal protein L14

Coloring options:


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