J4_8G2U_002

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G2U_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0706

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8G2U|1|B|G|297
8G2U|1|B|G|298
8G2U|1|B|A|299
8G2U|1|B|A|300
8G2U|1|B|G|301
*
8G2U|1|B|C|316
8G2U|1|B|G|317
8G2U|1|B|C|318
8G2U|1|B|G|319
*
8G2U|1|B|C|323
8G2U|1|B|A|324
8G2U|1|B|G|325
*
8G2U|1|B|C|337
8G2U|1|B|G|338
8G2U|1|B|U|339
8G2U|1|B|A|340
8G2U|1|B|C|341

Current chains

Chain B

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24