J4_8G2U_005

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8G2U|1|B|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G2U_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0745

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8G2U|1|B|G|1310
8G2U|1|B|G|1311
8G2U|1|B|U|1312
8G2U|1|B|U|1313
8G2U|1|B|C|1314
*
8G2U|1|B|G|1338
8G2U|1|B|G|1339
8G2U|1|B|U|1340
8G2U|1|B|G|1341
8G2U|1|B|A|1342
8G2U|1|B|G|1343
*
8G2U|1|B|C|1404
8G2U|1|B|U|1405
*
8G2U|1|B|A|1597
8G2U|1|B|A|1598
8G2U|1|B|U|1599
8G2U|1|B|C|1600
8G2U|1|B|G|1601
8G2U|1|B|U|1602
8G2U|1|B|A|1603
8G2U|1|B|C|1604

Current chains

Chain B

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23