J4_8G2U_009

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8G2U|1|B|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G2U_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.0898

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8G2U|1|B|C|1833
8G2U|1|B|U|1834
8G2U|1|B|G|1835
*
8G2U|1|B|C|1905
8G2U|1|B|G|1906
*
8G2U|1|B|C|1924
8G2U|1|B|C|1925
8G2U|1|B|U|1926
8G2U|1|B|A|1927
8G2U|1|B|A|1928
8G2U|1|B|G|1929
8G2U|1|B|G|1930
8G2U|1|B|U|1931
8G2U|1|B|A|1932
8G2U|1|B|G|1933
*
8G2U|1|B|C|1967
8G2U|1|B|G|1968
8G2U|1|B|A|1969
8G2U|1|B|A|1970
8G2U|1|B|U|1971
8G2U|1|B|G|1972

Current chains

Chain B

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain v

Small subunit ribosomal RNA; SSU rRNA