3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
8G31|1|B|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8G31_005 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.0803
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8G31|1|B|G|1310
8G31|1|B|G|1311
8G31|1|B|U|1312
8G31|1|B|U|1313
8G31|1|B|C|1314
*
8G31|1|B|G|1338
8G31|1|B|G|1339
8G31|1|B|U|1340
8G31|1|B|G|1341
8G31|1|B|A|1342
8G31|1|B|G|1343
*
8G31|1|B|C|1404
8G31|1|B|U|1405
*
8G31|1|B|A|1597
8G31|1|B|A|1598
8G31|1|B|U|1599
8G31|1|B|C|1600
8G31|1|B|G|1601
8G31|1|B|U|1602
8G31|1|B|A|1603
8G31|1|B|C|1604

Current chains

Chain B
23S

Nearby chains

Chain 2
50S ribosomal protein L34
Chain T
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5363 s
Application loaded.