J4_8G34_001

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8G34|1|B|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G34_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2127

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8G34|1|B|C|268
8G34|1|B|C|269
*
8G34|1|B|G|370
8G34|1|B|A|371
8G34|1|B|G|372
8G34|1|B|U|373
8G34|1|B|A|374
8G34|1|B|G|375
*
8G34|1|B|U|399
8G34|1|B|G|400
8G34|1|B|A|401
8G34|1|B|A|402
8G34|1|B|U|403
8G34|1|B|A|404
8G34|1|B|U|405
8G34|1|B|G|406
*
8G34|1|B|C|421
8G34|1|B|A|422
8G34|1|B|A|423
8G34|1|B|G|424

Current chains

Chain B

23S

Nearby chains

Chain X

50S ribosomal protein L28