J4_8G34_006

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8G34|1|B|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G34_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0877

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8G34|1|B|U|1313
8G34|1|B|C|1314
*
8G34|1|B|G|1338
8G34|1|B|G|1339
8G34|1|B|U|1340
8G34|1|B|G|1341
8G34|1|B|A|1342
8G34|1|B|G|1343
*
8G34|1|B|C|1404
8G34|1|B|U|1405
*
8G34|1|B|A|1597
8G34|1|B|A|1598
8G34|1|B|U|1599
8G34|1|B|C|1600
8G34|1|B|G|1601
8G34|1|B|U|1602
8G34|1|B|A|1603

Current chains

Chain B

23S

Nearby chains

Chain T

50S ribosomal protein L23