J4_8G34_013

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8G34|1|v|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G34_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1093

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8G34|1|v|G|142
8G34|1|v|A|143
8G34|1|v|G|144
*
8G34|1|v|C|178
8G34|1|v|A|179
8G34|1|v|U|180
8G34|1|v|A|181
8G34|1|v|A|182
8G34|1|v|C|183
8G34|1|v|G|184
*
8G34|1|v|C|193
8G34|1|v|C|194
8G34|1|v|A|195
8G34|1|v|A|196
8G34|1|v|A|197
8G34|1|v|G|198
*
8G34|1|v|U|219
8G34|1|v|G|220
8G34|1|v|C|221

Current chains

Chain v

16S

Nearby chains

Chain s

30S ribosomal protein S20