J4_8G38_001

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8G38|1|B|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G38_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2255

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8G38|1|B|C|268
8G38|1|B|C|269
*
8G38|1|B|G|370
8G38|1|B|A|371
8G38|1|B|G|372
8G38|1|B|U|373
8G38|1|B|A|374
8G38|1|B|G|375
*
8G38|1|B|U|399
8G38|1|B|G|400
8G38|1|B|A|401
8G38|1|B|A|402
8G38|1|B|U|403
8G38|1|B|A|404
8G38|1|B|U|405
8G38|1|B|G|406
*
8G38|1|B|C|421
8G38|1|B|A|422
8G38|1|B|A|423
8G38|1|B|G|424

Current chains

Chain B

23S

Nearby chains

Chain X

50S ribosomal protein L28