J4_8G38_010

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G38_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1283

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8G38|1|B|G|2643
8G38|1|B|G|2644
8G38|1|B|G|2645
8G38|1|B|C|2646
*
8G38|1|B|G|2674
8G38|1|B|A|2675
8G38|1|B|C|2676
*
8G38|1|B|G|2731
8G38|1|B|G|2732
8G38|1|B|A|2733
8G38|1|B|A|2734
8G38|1|B|G|2735
*
8G38|1|B|U|2769
8G38|1|B|G|2770
8G38|1|B|C|2771

Current chains

Chain B

23S

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14