J4_8G38_011

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8G38|1|v|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G38_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1728

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8G38|1|v|G|115
8G38|1|v|A|116
8G38|1|v|G|117
8G38|1|v|U|118
8G38|1|v|A|119
8G38|1|v|A|120
8G38|1|v|U|121
8G38|1|v|G|122
*
8G38|1|v|U|239
8G38|1|v|G|240
*
8G38|1|v|C|286
8G38|1|v|U|287
8G38|1|v|A|288
8G38|1|v|G|289
*
8G38|1|v|C|311
8G38|1|v|C|312

Current chains

Chain v

16S

Nearby chains

Chain o

30S ribosomal protein S16

Chain p

30S ribosomal protein S17