J4_8G4S_002
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- ACG*CGAAGG*CCGUAAACGGUG*CU
- Length
- 23 nucleotides
- Bulged bases
- 8G4S|1|2|C|503, 8G4S|1|2|A|777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8G4S_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1247
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8G4S|1|2|A|502
8G4S|1|2|C|503
8G4S|1|2|G|504
*
8G4S|1|2|C|726
8G4S|1|2|G|727
8G4S|1|2|A|728
8G4S|1|2|A|729
8G4S|1|2|G|730
8G4S|1|2|G|731
*
8G4S|1|2|C|772
8G4S|1|2|C|773
8G4S|1|2|G|774
8G4S|1|2|U|775
8G4S|1|2|A|776
8G4S|1|2|A|777
8G4S|1|2|A|778
8G4S|1|2|C|779
8G4S|1|2|G|780
8G4S|1|2|G|781
8G4S|1|2|U|782
8G4S|1|2|G|783
*
8G4S|1|2|C|844
8G4S|1|2|U|845
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain L
- SSU ribosomal protein S17P
- Chain N
- Ribosomal protein S13
- Chain O
- Ribosomal protein S14
- Chain W
- SSU ribosomal protein S8P (Fragment)
- Chain X
- SSU ribosomal protein S12P
- Chain a
- 40S ribosomal protein S26
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