3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CC*GAGUCG*CAAAGCG*UAAG
Length
19 nucleotides
Bulged bases
8G60|1|L5|C|309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8G60_003 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.1193
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_94698.1
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
Number of instances in this motif group
10

Unit IDs

8G60|1|L5|C|111
8G60|1|L5|C|112
*
8G60|1|L5|G|278
8G60|1|L5|A|279
8G60|1|L5|G|280
8G60|1|L5|U|281
8G60|1|L5|C|282
8G60|1|L5|G|283
*
8G60|1|L5|C|304
8G60|1|L5|A|305
8G60|1|L5|A|306
8G60|1|L5|A|307
8G60|1|L5|G|308
8G60|1|L5|C|309
8G60|1|L5|G|310
*
8G60|1|L5|U|327
8G60|1|L5|A|328
8G60|1|L5|A|329
8G60|1|L5|G|330

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LL
eL13
Chain LN
eL15
Chain Lh
uL29
Chain Li
eL36

Coloring options:


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