J4_8G6J_002
3D structure
- PDB id
- 8G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(G7M)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 8G6J|1|At|4SU|8, 8G6J|1|At|U|47, 8G6J|1|At|C|48
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8G6J_002 not in the Motif Atlas
- Homologous match to J4_5WT1_002
- Geometric discrepancy: 0.2032
- The information below is about J4_5WT1_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_40477.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-F-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8G6J|1|At|A|7
8G6J|1|At|4SU|8
8G6J|1|At|A|9
8G6J|1|At|G|10
*
8G6J|1|At|C|25
8G6J|1|At|A|26
8G6J|1|At|G|27
*
8G6J|1|At|C|43
8G6J|1|At|G|44
8G6J|1|At|U|45
8G6J|1|At|G7M|46
8G6J|1|At|U|47
8G6J|1|At|C|48
8G6J|1|At|C|49
*
8G6J|1|At|G|65
8G6J|1|At|U|66
Current chains
- Chain At
- A-site tRNA
Nearby chains
- Chain EF
- Elongation factor 1-alpha 1
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SX
- uS12
- Chain Se
- FAU ubiquitin-like and ribosomal protein S30
Coloring options: