J4_8G6J_015

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

8G6J|1|L5|U|4677

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G6J|1|L5|G|4587
8G6J|1|L5|U|4588
8G6J|1|L5|A|4589
8G6J|1|L5|A2M|4590
*
8G6J|1|L5|OMU|4620
8G6J|1|L5|C|4621
*
8G6J|1|L5|G|4676
8G6J|1|L5|U|4677
8G6J|1|L5|G|4678
*
8G6J|1|L5|C|4712
8G6J|1|L5|G|4713
8G6J|1|L5|C|4714
8G6J|1|L5|C|4715

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23